Yes, our internal scripts will configure the memory for the different services after you restart the machine.
Apache will probably use the "large" configuration files (/opt/bitnami/apache2/conf/bitnami/). If the instance is bigger than a large, it'll use the "xlarge" or "2xlarge" configuration files.
Yes, there are also custom configuration files inside the /opt/bitnami/mysql/bitnami. You can take a look at those files and edit them if necessary.
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